diff --git a/src/Generator/Generator.cs b/src/Generator/Generator.cs
index 1606cc2a..436c8909 100644
--- a/src/Generator/Generator.cs
+++ b/src/Generator/Generator.cs
@@ -71,7 +71,7 @@ namespace CppSharp.Generators
                 if (!unit.IsGenerated || !unit.HasDeclarations)
                     continue;
 
-                if (unit.IsSystemHeader)
+                if (unit.IsSystemHeader || !unit.IsValid)
                     continue;
 
                 var templates = Generate(unit);
diff --git a/src/Generator/Passes/CleanUnitPass.cs b/src/Generator/Passes/CleanUnitPass.cs
index 9e933183..2d3628ba 100644
--- a/src/Generator/Passes/CleanUnitPass.cs
+++ b/src/Generator/Passes/CleanUnitPass.cs
@@ -18,9 +18,12 @@ namespace CppSharp.Passes
                 
             // Try to get an include path that works from the original include
             // directories paths.
-
-            unit.IncludePath = GetIncludePath(unit.FilePath);
-            return true;
+            if (unit.IsValid)
+            {
+                unit.IncludePath = GetIncludePath(unit.FilePath);
+                return true;
+            }
+            return false;
         }
 
         string GetIncludePath(string filePath)